06/12/2026
Genetic Discoveries
COI, Kinship, Haplotypes.
To effectively preserve the golden retriever breed, I understand that I must combine Coefficient of Inbreeding (COI), Kinship, and Haplotype Heterozygosity through a framework known as Genomic Optimum Contribution Selection (GOCS) paired with strategic mate Allocation (MA).
Relying on just one metric fails breed preservation. Low COI alone can still cause rare alleles to drift out of the population, while balancing broad kinship alone can accidentally disrupt specialized immune haplotypes like the Dog Leukocyte Antigen (DLA). Combining them creates a multi-layered filter: Kinship manages the population's future trajectory, COI manages the individual litter's safety, and haplotype heterozygosity protects critical immune functional areas.
At present I have 4 distinct golden retriever subpopulations in our pack.
1. US performance
2. UK working
3. US gun dog - Haplotype "Rare"
4. US popular sire-less, at least back to the 70's
I also have a couple of additional A-1 subpopulations.
1a. CAN, not using US popular sires. (Frozen)
2a. Combinations of DDHF pedigrees that combine some CH and some popular sire-less field pedigrees. These are unique to everything I have.
3a. Risen CH - who was born in 1975
After bringing in Nova (Popular sire-less) from the SE US. She is great for COI and kinship reduction but I found all her haplotypes are in the high occurrence category? This puzzled me a bit.
So I purchased Rose, once again great for lowering COI and kinship but she too had high occurrence haplotypes and DLA II is homozygous? Mmm what is going on with these regional popular sire-less golden haplotypes? I thought I would pick up some low occurrence haplotypes? Not just COI and Kinship.
I looked elsewhere a few months ago and brought in two more US goldens from a different regional location. Farah and Kate. There father's name was Charlie so, of course I went back to the original 1976 Charlie's Angels.
Interestingly, so far, every popular sire-less pup I've brought in (4) are CLEAR - CI1, CI2, CMS, DM, NCL, PRA1, PRA2, PRCD, SAN, HPN 1,2,3.
I just got Kate's VGL report back
DLA I DLA II
1066 @ 27% 2046 @ 24%
1069 @ 4% 2045 @ 4%
She's heterozygous and has two "rare" haplotypes. Also Sasha, the golden I breed who lived to 17 years old had 1069 & 2045??? Interesting! The UK goldens I have, don't carry 1069 & 1045? The US performance goldens I have don't carry 1069 & 1045? I'm thrilled I found another golden with 1069 & 1045? Especially since Sasha lived to 17 and haplotypes control longevity and immune system components.
So, my plan is to take Kate and Farah and cross them back to Buzz, a Scottish born Gael son living in the USA.
I already know the COI and Kinship will be great. I will get genetic COIs on this litter. But the real kicker will be the combination of rare Scottish haplotypes compared to US goldens and IF I can get a couple pups carrying 1069 & 1045 in addition to 1014 & 2050?
This is getting very interesting and super exciting over the next 3 years.
In conjunction with this, I contacted Rhonda about using a UK golden and a performance golden with Risen in 2027. The two outcomes are VERY unique. The best COI and kinship will be through the UK golden but if I pair a Ruby or Wacipi with Risen, I bypass both Barty and Zeus on one side. Then I can take a pup and cross back to UK and bypass Barty a second time on one side.